研究动态
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揭示脾脏边缘区淋巴瘤的基因学变化。

Unraveling the genetics of transformed splenic marginal zone lymphoma.

发表日期:2023 Mar 30
作者: Marta Grau, Cristina López, Alba Navarro, Gerard Frigola, Ferran Nadeu, Guillem Clot, Gabriela Bastidas, Miguel Alcoceba, Maria Joao Baptista, Margarita Blanes, Dolors Colomer, Dolors Costa, Eva Domingo-Domenech, Anna Enjuanes, Lourdes Escoda, Pilar Forcada, Eva Gine, Monica Lopez-Guerra, Olga Ramón, Alfredo Rivas-Delgado, Laura Vicente-Folch, Andrew Wotherspoon, Fina Climent, Elías Campo, Armando López-Guillermo, Estella Matutes, Sílvia Beà
来源: Blood Advances

摘要:

与脾边缘区淋巴瘤(SMZL)转化(SMZL-T)相关的遗传机制尚不清楚。我们研究了41例最终经历大B细胞淋巴瘤转化的SMZL患者。肿瘤材料仅在诊断时(9例患者)、诊断和转化时(18例患者)以及仅在转化时(14例患者)获得。样本分为两组:i)诊断时(SMZL,n=27个样本),和ii)转化时(SMZL-T,n=32个样本)。使用拷贝数组和下一代测序自定义面板,我们确定了SMZL-T中的主要基因组变化涉及TNFAIP3、KMT2D、TP53、ARID1A、KLF2、1q增益和9p21.3(CDKN2A/B)和7q31-q32的失衡。与SMZL相比,SMZL-T具有更高的基因组复杂性和TNFAIP3、TP53突变、9p21.3(CDKN2A/B)缺失和6p增益的更高发生率。SMZL和SMZL-T克隆体均由共同变异的前体细胞产生的分歧演化而来,在几乎所有可评估的病例中(12/13, 92%),都获得了不同的基因变异。在一位患者的诊断和转化样本中使用全基因组测序,我们观察到SMZL-T样本携带的基因组畸变比诊断样本更多,发现了存在于两个样本中的t(14;19)(q32;q13)易位,并检测到由于染色体断裂(chromothripsis)导致的B2M差错删除在转化时获得。生存分析表明,KLF2突变、复杂染色体核型和转化时的国际预后指数预测转化后生存较短(P=0.001、P=0.042和P=0.007,分别)。总之,与SMZL相比,SMZL-T表现出更高的基因组复杂性和特有的基因组变异,这些变异可能是转化事件的关键因素。 版权所有(C)2023美国血液学会。
The genetic mechanisms associated with splenic marginal zone lymphoma transformation (SMZL-T) are not well defined. We studied 41 SMZL patients that eventually underwent large B-cell lymphoma transformation. Tumor material was obtained only at diagnosis (9 patients), at diagnosis and transformation (18 patients), and only at transformation (14 patients). Samples were categorized in two groups: i) at diagnosis (SMZL, n=27 samples), and ii) at transformation (SMZL-T, n=32 samples). Using copy number arrays and a next-generation sequencing custom panel, we identified that the main genomic alterations in SMZL-T involved TNFAIP3, KMT2D, TP53, ARID1A, KLF2, 1q gains and losses of 9p21.3 (CDKN2A/B) and 7q31-q32. Compared with SMZL, SMZL-T had higher genomic complexity, and higher incidence of TNFAIP3 and TP53 alterations, 9p21.3 (CDKN2A/B) losses and 6p gains. SMZL and SMZL-T clones arose by divergent evolution from a common altered precursor cell which acquired different genetic alterations in virtually all evaluable cases (12/13, 92%). Using whole genome sequencing from diagnostic and transformation samples in one patient, we observed that the SMZL-T sample carried more genomic aberrations than the diagnostic sample, identified a translocation t(14;19)(q32;q13) present in both samples, and detected a focal B2M deletion due to chromothripsis acquired at transformation. Survival analysis showed that KLF2 mutations, complex karyotype and international prognostic index at transformation predicted for a shorter survival from transformation (P=0.001, P=0.042, and P=0.007, respectively). In summary, SMZL-T are characterized by higher genomic complexity than SMZL, and characteristic genomic alterations that could represent key players in the transformation event.Copyright © 2023 American Society of Hematology.