研究动态
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通过整合空间转录组学和脂质组学分析,发现胰腺癌前体病变中长链硫酸脂类生物合成的富集作为一种早期代谢异常。

Integrated spatial transcriptomics and lipidomics of precursor lesions of pancreatic cancer identifies enrichment of long chain sulfatide biosynthesis as an early metabolic alteration.

发表日期:2023 Aug 15
作者: Marta Sans, Yihui Chen, Fredrik I Thege, Rongzhang Dou, Jimin Min, Michele Yip-Schneider, Jianjun Zhang, Ranran Wu, Ehsan Irajizad, Yuki Makino, Kimal I Rajapakshe, Mark W Hurd, Ricardo A León-Letelier, Jody Vykoukal, Jennifer B Dennison, Kim-Anh Do, Robert A Wolff, Paola A Guerrero, Michael P Kim, C Max Schmidt, Anirban Maitra, Samir Hanash, Johannes F Fahrmann
来源: Cell Death & Disease

摘要:

多样化的空间谱学技术的发展,为了解癌症发病机制提供了前所未有的视角。在这里,我们首次进行了关于导管内乳头状黏液性肿瘤(IPMN)进展所伴随的空间转录组学和空间代谢组学变化的跨物种综合评估,IPMN是胰腺导管腺癌(PDAC)的真正囊性前体。我们用人类切除的IPMN组织(N= 23)以及IPMN小鼠突变Kras; Gnas模型的胰腺进行了基于基质辅助激光解析/电离(MALDI)质谱(MS)的空间成像和Visium空间转录组学(ST)(10X Genomics)分析。结论进一步与89例组织学确认为IPMN的患者囊性液体的脂质组分析,以及PDAC和正常组织的单细胞和批量转录组学数据进行了比较。IPMN组织的MALDI-MS分析揭示了长链羟基化硫酰胺,特别是C24:0(OH)和C24:1(OH)物种,在IPMN和PDAC肿瘤上皮中选择性富集。集成的ST分析证实,参与硫酸酯生物合成的配基转录本(包括UGT8,Gal3St1和FA2H)与硫酸酯富集区域共定位。囊性液体的脂质组分析确定了几种硫酸酯物种,包括C24:0(OH)和C24:1(OH)物种,在IPMN/PDAC患者中显著升高,与低级IPMN患者相比。通过选择性半乳糖脂合成酶抑制剂UGT8-IN-1去靶向硫酸酯代谢,造成细胞质内的致命噬菌体和随后的癌细胞死亡,这在体外实验中得到验证,并且减弱了突变Kras; Gnas异种移植瘤的肿瘤生长。UGT8和FA2H的转录水平也在PDAC转录组学数据集中显著富集,与非癌变区域相比,升高的肿瘤UGT8预示整体生存不良。增强的硫酸酯代谢是胰腺囊性前癌病变的早期代谢变化,并且在浸润性肿瘤中持续存在。靶向硫酸酯生物合成可能代表一种可操作的癌症干预漏洞。
The development of diverse spatial profiling technologies has provided an unprecedented insight into molecular mechanisms driving cancer pathogenesis. Here, we conducted the first integrated cross-species assessment of spatial transcriptomics and spatial metabolomics alterations associated with progression of intraductal papillary mucinous neoplasms (IPMN), bona fide cystic precursors of pancreatic ductal adenocarcinoma (PDAC).Matrix Assisted Laster Desorption/Ionization (MALDI) mass spectrometry (MS)-based spatial imaging and Visium spatial transcriptomics (ST) (10X Genomics) was performed on human resected IPMN tissues (N= 23) as well as pancreata from a mutant Kras;Gnas mouse model of IPMN. Findings were further compared with lipidomic analyses of cystic fluid from 89 patients with histologically confirmed IPMNs, as well as single-cell and bulk transcriptomic data of PDAC and normal tissues.MALDI-MS analyses of IPMN tissues revealed long-chain hydroxylated sulfatides, particularly the C24:0(OH) and C24:1(OH) species, to be selectively enriched in the IPMN and PDAC neoplastic epithelium. Integrated ST analyses confirmed that the cognate transcripts engaged in sulfatide biosynthesis, including UGT8, Gal3St1 , and FA2H , were co-localized with areas of sulfatide enrichment. Lipidomic analyses of cystic fluid identified several sulfatide species, including the C24:0(OH) and C24:1(OH) species, to be significantly elevated in patients with IPMN/PDAC compared to those with low-grade IPMN. Targeting of sulfatide metabolism via the selective galactosylceramide synthase inhibitor, UGT8-IN-1, resulted in ceramide-induced lethal mitophagy and subsequent cancer cell death in vitro , and attenuated tumor growth of mutant Kras;Gnas allografts. Transcript levels of UGT8 and FA2H were also selectively enriched in PDAC transcriptomic datasets compared to non-cancerous areas, and elevated tumoral UGT8 was prognostic for poor overall survival.Enhanced sulfatide metabolism is an early metabolic alteration in cystic pre-cancerous lesions of the pancreas that persists through invasive neoplasia. Targeting sulfatide biosynthesis might represent an actionable vulnerability for cancer interception.