表皮卵巢癌患者的祖传致病变异和祖源遗传咨询
Germline Pathogenic Variants and Genetic Counseling by Ancestry in Patients With Epithelial Ovarian Cancer.
发表日期:2023 Sep
作者:
Tiffany Y Sia, Anna Maio, Yelena M Kemel, Kanika S Arora, Sushmita B Gordhandas, Ryan M Kahn, Erin E Salo-Mullen, Margaret A Sheehan, Prince Rainier Tejada, Chaitanya Bandlamudi, Qin Zhou, Alexia Iasonos, Rachel N Grisham, Roisin E O'Cearbhaill, William P Tew, Kara Long Roche, Oliver Zivanovic, Yukio Sonoda, Ginger J Gardner, Dennis S Chi, Alicia J Latham, Maria I Carlo, Yonina R Murciano-Goroff, Marie Will, Michael F Walsh, Mark E Robson, Diana L Mandelker, Michael F Berger, Nadeem R Abu-Rustum, Carol L Brown, Kenneth Offit, Jada G Hamilton, Carol Aghajanian, Britta Weigelt, Zsofia K Stadler, Ying L Liu
来源:
GENES & DEVELOPMENT
摘要:
评估上皮性卵巢癌(EOC)患者中与祖传致病性/可能致病性变异(PVs)和遗传咨询有关的血统率。纳入从2015年1月1日至2020年12月31日期间進行临床腫瘤-正常测序的病理确认的EOC患者,包括对≥76基因的基因组分析。对于新识别的PVs,患者被转介给临床遗传学服务(CGS)接受咨询。使用自述种族/族裔和Ashkenazi犹太人(AJ)渊源来定义族群。使用经过验证的算法进行计算推断遗传血统。建立了逻辑回归模型。在1,266名患者中,自述血统(AJ,17%;亚洲人,10%;黑人/非裔美国人,5.4%;西班牙裔,6.2%;非西班牙裔白人,57%;其他,0.16%;未知,4.0%)与遗传血统相关(AJ渊源,18%;混合血统,10%;非洲血统,4%;东亚人(EAS),6%;欧洲人,56%;美洲原住民,0.2%;南亚人(SAS),4%;未知,2%)。313名患者(25%)观察到了基因组PVs,其中195名患者(15%)在EOC相关基因中观察到了PVs。PV患者在诊断时年龄较轻(59岁对62岁;P < .001),且更有可能患高级浆液性卵巢癌(83%对72%;P = .009)。血统群组间的PV患病率有所差异(P < .001),AJ(39.9%)和亚洲人(26.5%)群组的患病率最高,而其他血统群组的患病率(>10%)类似。遗传血统的使用显示了类似结果,并进一步描绘了EAS/SAS群组中的高PV患病率。较年轻的年龄,高级别浆液性组织学和自述的AJ或亚洲血统与EOC相关基因的PV相关联。新识别PV的CGS咨询率在所有血统群组中较高(80%)。
无论血统如何,尤其是在EOC相关基因中,PV患病率很高,各群组间接受咨询的比率相似,强调在所有EOC患者中进行全面遗传测试的重要性。
To evaluate rates of germline pathogenic/likely pathogenic variants (PVs) and genetic counseling by ancestry in patients with epithelial ovarian cancer (EOC).Patients with pathologically confirmed EOC who underwent clinical tumor-normal sequencing from January 1, 2015, to December 31, 2020, inclusive of germline analysis of ≥76 genes were included. Patients with newly identified PVs were referred for Clinical Genetics Service (CGS) counseling. Ancestry groups were defined using self-reported race/ethnicity and Ashkenazi Jewish (AJ) heritage. Genetic ancestry was inferred computationally using validated algorithms. Logistic regression models were built.Of 1,266 patients, self-reported ancestry (AJ, 17%; Asian, 10%; Black/African American, 5.4%; Hispanic, 6.2%; non-Hispanic White, 57%; other, 0.16%; unknown, 4.0%) correlated with genetic ancestry (AJ ancestry, 18%; admixed, 10%; African, 4%; East Asian [EAS], 6%; European, 56%; Native American, 0.2%; South Asian [SAS], 4%; unknown, 2%). Germline PVs were observed in 313 (25%) patients, including 195 (15%) with PVs in EOC-associated genes. Those with PVs were younger at diagnosis (59 v 62 years; P < .001) and more likely to have high-grade serous ovarian cancer (83% v 72%; P = .009). PV prevalence varied between ancestry groups (P < .001), with highest rates in the AJ (39.9%) and Asian (26.5%) groups and similar rates (>10%) across other ancestry groups. Use of genetic ancestry demonstrated similar findings and further characterized high rates of PV in EAS/SAS groups. Younger age, high-grade serous histology, and self-reported AJ or Asian ancestry were associated with PV in an EOC-associated gene. Rates of CGS counseling for newly identified PVs were high (80%) across ancestry groups.Rates of PV, particularly in EOC-associated genes, were high regardless of ancestry, with similar rates of counseling between groups, emphasizing the importance of universal genetic testing in all patients with EOC.