研究动态
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FoxA1/2 依赖性表观基因组重编程驱动肺腺癌谱系转换。

FoxA1/2-dependent epigenomic reprogramming drives lineage switching in lung adenocarcinoma.

发表日期:2023 Nov 02
作者: Katherine Gillis, Walter A Orellana, Emily Wilson, Timothy J Parnell, Gabriela Fort, Headtlove Essel Dadzie, Xiaoyang Zhang, Eric L Snyder
来源: Epigenetics & Chromatin

摘要:

癌细胞改变其身份的能力对于肿瘤的生存和进展至关重要。 KRAS 驱动的肺腺癌 (LUAD) 中肺谱系特异性因子 NKX2-1 的缺失会促进肿瘤进展,并导致肺至胃谱系转换,该转换依赖于先锋因子 FoxA1 和 FoxA2 的活性;然而,其根本机制仍然很大程度上未知。在这里,我们证明 FoxA1/2 重新编程 NKX2-1 阴性 LUAD 的表观遗传景观,以促进胃身份。 Nkx2-1 缺失后,FoxA1/2 通过招募 TET3(一种诱导 DNA 去甲基化的酶)来介导胃定义基因的去甲基化。 H3K27ac ChIP-seq 和 HiChIP 显示 FoxA1/2 还控制调节元件的活性及其在胃位点的 3D 相互作用。此外,FoxA1/2 依赖性表观遗传重编程需要致癌 KRAS。这项工作证明了 FoxA1/2 在重新连接甲基化和组蛋白景观以及 NKX2-1 阴性 LUAD 的顺式调节动力学以驱动癌细胞谱系转换中的作用。
The ability of cancer cells to alter their identity is essential for tumor survival and progression. Loss of the pulmonary lineage specifier NKX2-1 within KRAS-driven lung adenocarcinoma (LUAD) enhances tumor progression and results in a pulmonary-to-gastric lineage switch that is dependent upon the activity of pioneer factors FoxA1 and FoxA2; however, the underlying mechanism remains largely unknown. Here, we show that FoxA1/2 reprogram the epigenetic landscape of NKX2-1-negative LUAD to facilitate a gastric identity. After Nkx2-1 deletion, FoxA1/2 mediate demethylation of gastric-defining genes through recruitment of TET3, an enzyme that induces DNA demethylation. H3K27ac ChIP-seq and HiChIP show that FoxA1/2 also control the activity of regulatory elements and their 3D interactions at gastric loci. Furthermore, oncogenic KRAS is required for the FoxA1/2-dependent epigenetic reprogramming. This work demonstrates the role of FoxA1/2 in rewiring the methylation and histone landscape and cis-regulatory dynamics of NKX2-1-negative LUAD to drive cancer cell lineage switching.